DeepView is an easy to use application that provides a user friendly interface allowing to analyze several proteins at the same time.
The proteins can be superimposed in order to deduce structural alignments and compare their active sites or any other relevant parts.
Amino acid mutations, H-bonds, angles and distances between atoms are easy to obtain thanks to the intuitive graphic and menu interface.
Working with these two programs greatly reduces the amount of work necessary to generate models, as it is possible to thread a protein primary sequence onto a 3D template and get an immediate feedback of how well the threaded protein will be accepted by the reference structure before submitting a request to build missing loops and refine sidechain packing.
Requirements:
· Java 1.5 or later
What`s New in This Release: [ read full changelog ]
· The Thymine C6 atom is now correctly loaded
· Fixed the POV-Ray output endless loop on the PC version
· The occasional crash while saving PDB files (such as 2i37) on the PC has been fixed
· Updated the address of the Uppsala Electron Density Map Server