Mondrian is a free software which enables researchers to visualize complex multi-dimensional genomic profiling data in the context of known biological pathways.
To navigate through the genomic profiling and pathway data, please note the following:
· By default, individual samples are displayed along columns, and the first sample is mapped to the current pathway (noted by the green rectangle in the screenshot above). To switch samples, select any of the left/right column buttons, or select an individual field within the heat map. This will automatically swap the entire genomic profile for the selected sample and display it on the current pathway.
· By default, individual genes within the network are displayed along rows. If you select one of the row navigation buttons, e.g. Next Row, the pathway view will automatically center on the newly selected gene.
· By default, the most recently loaded data file is mapped to the pathway. To swap to copy number data, select "Copy Number Data" from the pull-down menu located directly to the right of "Constant: datatype".
Requirements:
· Java 1.5 or later
