CLC DNA Workbench provides a wide range of advanced DNA sequence analyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench.
CLC DNA Workbench is available on Mac OS X, Windows and Linux platforms.
Please note: All data created during the trial period is fully accessible from CLC Free Workbench after expiry of your demo-license.
Here are some key features of "CLC DNA Workbench":
· Assembly of DNA sequencing data.
· Graphically and algorithmically advanced primer design.
· Molecular cloning.
· Fully integrated 1D DNA Gel Simulator.
· Automatic SNP annotation of sequences.
· 2 types of alignments.
· Phylogenetics.
· Motif search (known patterns).
· Motif search using regular expressions.
· Motif search using ProSite patterns.
· Pattern discovery (unknown patterns).
· Web based BLAST.
· BLAST on local databases.
· Batch processing of multiple analyses in one work-step.
· Dot plots.
· Hydrophobicity analyses.
· Searches on GenBank and PubMed.
· Detailed log of actions/analyses performed.
Requirements:
· 256 MB RAM required.
· 512 MB RAM recommended.
· 1024 x 768 display recommended.
Limitations:
· 30 days trial
What`s New in This Release: [ read full changelog ]
New and improved features:
· All history entries will from now on include the version number of the software
· Performance of Excel 2010 exporter improved in terms of speed and memory requirements
· When using a license server, the Workbench user can now specify a custom user name which can be checked in the license server configuration. This makes it possible to get more fine-grained control of the users of the license server.
· BLAST
· BLAST parameters have been changed so that number of threads is 1 per default (there is a bug in the BLAST code provided by NCBI which makes it fails on certain data sets when using multiple threads)
· The "Mask lower case" option has been removed
· Tool to download BLAST databases from NCBI within the Workbench
Bug fixes:
· Fixed: Alignment-based primer design failed for columns with many gaps
· Fixed: "Find Binding Sites and Create Fragments" did not find binding sites where the primer extended the 5` end of the template sequence
· Fixed: Import of certain special Ge...
