CLC Sequence Viewer (former CLC Free Workbench) is a tool that enabling users to make basic bioinformatics analysis by create a software environment.
Here are some key features of "CLC Sequence Viewer":
Bioinformatics features in CLC Sequence Viewer:
Multiple alignment of DNA, RNA, and proteins:
· Two proprietary algorithms
· ClustalW
· Muscle
· T-Coffee
· MAFFT
· Kalign
· Consensus sequence determination and management
· Conservation score along alignments
· Open reading frame determination
· Easy access to web-based protein and nucleotide search in GenBank, including download facilities and full graphical overview of sequence annotations of your choice
· Translation from DNA to proteins (all genetic translation tables)
· Reports with residue composition, molecular weight and iso electric point (for proteins)
· Neighbor-joining and UPGMA phylogenies
· Restriction site analysis and viewing
· Create reverse complement
· Shuffle sequence
· Option of viewing and graphical manipulation of bioinformatics analyses made in commercial workbenches from CLC bio
Other features in CLC Sequence Viewer:
· Full integration of data input, data management, calculations results, and data export. This eliminates time spent on manual data transfers between different programs and databases
· All types of files can be saved in local projects and launched from the program
· Detailed history log
· User-friendly graphical tools used in order to find and work with relevant regions of DNA, RNA and protein sequences
· Text-based sequence view
· Easy printing of reports and graphics
· Export of user-defined figures to various graphics file formats
· Import and export of data in a large number of file formats
· Option of working with different files and in different file projects at the same time
· Option of working in several active workspaces at a time, enabling simultaneous work on multiple projects
Requirements:
· 256 MB RAM required.
· 512 MB RAM recommended.
· 1024 x 768 display recommended.
· 32 or 64 bit
What`s New in This Release: [ read full changelog ]
Bug fixes:
· Improved support for Mac OS X systems with japanese language
· Improved support for systems with 512 MB of memory or less
